{
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  "Package": "bbsBayes2",
  "Type": "Package",
  "Title": "Hierarchical Bayesian Analysis of North American BBS Data",
  "Version": "1.2026.0",
  "Authors@R": "c(person(\"Brandon P.M.\", \"Edwards\", role = c(\"aut\", \"cre\"),\nemail = \"brandonedwards3@cmail.carleton.ca\"),\nperson(\"Adam C.\", \"Smith\", role = \"aut\",\nemail = \"adam.smith@ec.gc.ca\"),\nperson(\"Steffi\", \"LaZerte\", role = \"aut\",\nemail = \"steffi@steffi.ca\"))",
  "SystemRequirements": "CmdStan\n(https://mc-stan.org/users/interfaces/cmdstan)",
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  "BugReports": "https://github.com/bbsBayes/bbsBayes2/issues",
  "NeedsCompilation": "no",
  "Description": "The North American Breeding Bird Survey (BBS) is a\nlong-running program that seeks to monitor the status and\ntrends of birds that spend the breeding season in Canada and\nthe United States. Since its start in 1966, the BBS has\naccumulated almost 60 years of data for over 500 species of\nNorth American Birds. Given the temporal and spatial structure\nof the data, hierarchical Bayesian models are used to assess\nthe status and trends of these 500+ species of birds.\n'bbsBayes2' allows you to perform hierarchical Bayesian\nanalysis of BBS data. You can fit 9 different models to the\nobservations for one or more species, and you can take specify\nhow the data should be stratified, what spatial and temporal\nextent of the data should be included, the settings for the\nsampling of the posterior distributions, access and modify the\nStan models, and explore model diagnostics, including prior and\nposterior predictions, convergence, and measures of relative\nmodel fit (`loo` and cross-validation).",
  "License": "MIT + file LICENSE",
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  "Repository": "https://bbsbayes.r-universe.dev",
  "Date/Publication": "2026-06-19 19:37:28 UTC",
  "RemoteUrl": "https://github.com/bbsBayes/bbsBayes2",
  "RemoteRef": "HEAD",
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  "Packaged": {
    "Date": "2026-06-19 21:06:38 UTC",
    "User": "root"
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  "Author": "Brandon P.M. Edwards [aut, cre],\nAdam C. Smith [aut],\nSteffi LaZerte [aut]",
  "Maintainer": "Brandon P.M. Edwards <brandonedwards3@cmail.carleton.ca>",
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  "_created": "2026-06-19T21:06:38.000Z",
  "_published": "2026-06-19T21:23:53.164Z",
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    "description": "📊Ecological Statistician at Ducks Unlimited Canada @DUC-IWWR. Research at the intersection of 🦆ecology, 📈statistics, and 👨‍💻computer science.",
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    "get_model_vars",
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    "stratify"
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      "class": [
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      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
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        "tbl",
        "data.frame"
      ],
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        "variant",
        "file"
      ],
      "rows": 9,
      "table": true,
      "tojson": true
    },
    {
      "name": "bbs_strata",
      "title": "List of included strata",
      "object": "bbs_strata",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
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      "title": "equal_area_crs",
      "object": "equal_area_crs",
      "class": [
        "crs"
      ],
      "fields": [],
      "table": true,
      "tojson": false
    },
    {
      "name": "pacific_wren_model",
      "title": "Example model output",
      "object": "pacific_wren_model",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "species_forms",
      "title": "Species forms",
      "object": "species_forms",
      "class": [
        "data.frame"
      ],
      "fields": [
        "aou_unid",
        "english_original",
        "english_combined",
        "french_combined",
        "aou_id"
      ],
      "rows": 14,
      "table": true,
      "tojson": true
    },
    {
      "name": "species_notes",
      "title": "Species notes",
      "object": "species_notes",
      "class": [
        "data.frame"
      ],
      "fields": [
        "english",
        "french",
        "aou",
        "minimum_year",
        "warning"
      ],
      "rows": 6,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "assign_prov_state",
      "title": "Categorize polygon by Province/State",
      "concept": [
        "helper functions"
      ],
      "topics": [
        "assign_prov_state"
      ]
    },
    {
      "page": "bbs_data_sample",
      "title": "Sample BBS data",
      "topics": [
        "bbs_data_sample"
      ]
    },
    {
      "page": "bbs_models",
      "title": "Stan models included in bbsBayes2",
      "topics": [
        "bbs_models"
      ]
    },
    {
      "page": "bbs_strata",
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      "topics": [
        "bbs_strata"
      ]
    },
    {
      "page": "bbsBayes2-defunct",
      "title": "bbsBayes2 defunct functions",
      "topics": [
        "bbsBayes2-defunct"
      ]
    },
    {
      "page": "bbsBayes2-deprecated",
      "title": "bbsBayes2 deprecated functions",
      "topics": [
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      ]
    },
    {
      "page": "copy_model_file",
      "title": "Copy model file",
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      "topics": [
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      ]
    },
    {
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      "topics": [
        "equal_area_crs"
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    },
    {
      "page": "fetch_bbs_data",
      "title": "Fetch Breeding Bird Survey dataset",
      "concept": [
        "BBS data functions"
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      "topics": [
        "fetch_bbs_data"
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    {
      "page": "generate_indices",
      "title": "Regional annual indices of abundance",
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        "indices and trends functions"
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    {
      "page": "generate_trends",
      "title": "Generate regional trends",
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    },
    {
      "page": "get_convergence",
      "title": "Convergence metrics",
      "concept": [
        "model assessment functions"
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      "topics": [
        "get_convergence"
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    },
    {
      "page": "get_model_vars",
      "title": "Get model variables",
      "concept": [
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      "title": "Remove bbsBayes2 cache",
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